目录
- MUMmer3.20fix two symlinks6年前
- chainingremove more binary files6年前
- mapping14年前
- mugsy-seqanlet's hope this works6年前
- src-libmafadd libmaf sources from multiz6年前
- utilscript for reporting variant sites in alignment14年前
- .gitignoreadd perl wrapper script6年前
- AUTHORS15年前
- CHANGELOGrelease 1.2.314年前
- LICENSE15年前
- Makefilebuild local libmaf6年前
- README.installrecompile and commits for 1.2.1 release15年前
- README.mdupdate readme6年前
- README.oldupdate readme6年前
- README.sourcesrecompile with more portable gcc flags14年前
- delta-dups.shadded missing script for --duplications15年前
- fixMAFnames.plmigration of sources to SF15年前
- labelblocks.plmigration of sources to SF15年前
- maf2fasta.plmigration of sources to SF15年前
- maf2gp.plmigration of sources to SF15年前
- maf2synchain.pltesting13年前
- mugsyfix 9 year old bug6年前
- mugsyenv.shsupport for genbank file input15年前
- mumi.shrecompile with latest makefile opts14年前
- mumi_fasta.shrecompile with latest makefile opts14年前
- plot.plmigration of sources to SF15年前
- splitmaf.plmigration of sources to SF15年前
- xmfa2maf.plsupport for more header formats15年前
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Mugsy - multiple whole genome alignment tool
This is a fork of the original sourceforge project [1]. It features bug fixes and performance improvements. However, at the moment compiling is still not ideal. Use with care.
Installation
Good luck.
Usage
Mugsy requires two additional renvironment variables.
The output is written to
/tmp/tmp.maf.License
This code is a chimera of at least the following projects:
Citation
Angiuoli SV, Salzberg SL. Mugsy: Fast multiple alignment of closely related whole genomes. Bioinformatics. 2010 Dec 9.
1: https://sourceforge.net/projects/mugsy/