MPRAnalyze

MPRAnalyze is an analysis framework designed for data generated by Massively Parallel Reporter Assays (MPRAs). MPRAnlayze can be used for quantification of enhancer-induced transcription rates, calssification of active\inactive enhancers, and comparative analyses of enhancer activity between conditions.

INSTALLATION

MPRAnalyze is released via bioconductor, and could be installed using the BiocManager package:

BiocManager::install("MPRAnalyze")

The newest version of MPRAnalyze can be installed directly from github:

library(devtools)
install_github("YosefLab/MPRAnalyze")