目录
- docspropagating changes to readme22天前
- imagesmature project, initial commit to github9年前
- srcbumping version number23天前
- tabular_tools.3年前
- test_dataadded additional self-tests, not yet mentioned in the README7年前
- test_resultsapparently git doesn't like empty directories7年前
- thesisadded a copy of the PhD thesis to the repo3年前
- tools.python2changed tools directory to contain python3 scripts; moved old tools directory to tools.python24年前
- toolsadded option to preserve previously softmasked intervals2年前
- .gitignoreadded src/lastz_40 to gitignore1年前
- LICENSEmature project, initial commit to github9年前
- Makefileadded lastz_40 build1年前
- Makefile.warningsadded lastz_40 build1年前
- README.lastz.htmlpropagating changes to readme22天前
- README.mdbumping version to 1.04.52 in prep for tagging a release1年前
- hsx_format.htmlmature project, initial commit to github9年前
- lav_format.htmlmature project, initial commit to github9年前
- make-include.makmature project, initial commit to github9年前
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LASTZ - pairwise DNA sequence aligner
This repository contains the latest official working branch of LASTZ. Official releases are tagged, and can be found in https://github.com/lastz/lastz/releases. Users are encouraged to use a tagged release, as this working branch may not be stable.
For information about installation and use, see https://lastz.github.io/lastz (equivalent to README.lastz.html in this repository).
As of this writing, the latest official release is version 1.04.52. Legacy releases — those prior to September 2021 — can be found at http://www.bx.psu.edu/~rsharris/lastz (in the form of tarballs).
The UCSC genome browser group has included lastz and lastz_D in their prebuilt binaries (the version there might lag behind the latest version here):
Two GPU accelerated versions, KegAlign and SegAlign, can be found at https://github.com/galaxyproject/KegAlign and https://github.com/gsneha26/SegAlign.
Updated Apr/2/2025 by Bob Harris (the LASTZ guy)