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InferCNV is no longer supported. Please explore alternatives such as InferCNA (https://jlaffy.github.io/infercna/)[https://jlaffy.github.io/infercna/], CopyKAT (https://github.com/navinlabcode/copykat)[https://github.com/navinlabcode/copykat], and Numbat (https://github.com/kharchenkolab/numbat)[https://github.com/kharchenkolab/numbat]

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Subclustering

Subclustering resolution is one of the primary settings that will need to be adjusted in most runs to avoid oversplitting. The tutorial below explains how it works and details about it can also be found on the wiki.

Documentation

Full documentation

Visit project wiki for InferCNV documentation.

Infercnv video tutorial

A video tutorial giving on overview of infercnv features and how to run an analysis can be found below (click on the image):