CyTOFpower

Description

This package is a tool to predict the power of CyTOF experiments, in the context of differential state analyses using CytoGLMM or diffcyt packages. This package provides a shiny app with two options to predict the power of an experiment. One part generates in-sicilico CyTOF data, using users input parameters (for instance the number of markers, the number of cells, or the expected fold change for the differential expressed markers). And the other part allows the user to browse in a grid of parameters for which the power was precomputed.

Installation

To install the package from github:

if (!requireNamespace("devtools", quietly = TRUE)){
     install.packages("devtools")
}
devtools::install_github("FerreiraAM/CyTOFpower")

Example

More information are available in the vignette:

vignette("CyTOFpower", package = "CyTOFpower")